Современные методы секвенирования ДНК (обзор)

СтатьяПРОБ ОСОБ ОПАС ИНФ. 2014; № 2: 73–79. DOI:10.21055/0370-1069-2014-2-73-79

Краснов Я.М.^[1]

Гусева Н.П.^[1]

Шарапова Н.А.^[1]

Черкасов А.В.^[1]

^[1]Российский научно-исследовательский противочумный институт «Микроб»

секвенирование

методы

ДНК

Геном человека

ДНК

Датчики

Лазеры

Методы

Микросферы

Нанопоры

Нуклеотиды

Обзор

Секвенирование ДНК

Технология

Ферменты

Человек

Скрябин К.Г, Прохорчук Е.Б., Мазур А.М., Булыгина Е.С., Цыганкова С.В., Недолужко А.В., Расторгуев С.М., Матвеев В.Б., Чеканов Н.Н., Горанская Д.А., Теслюк А.Б., Груздева Н.М., Велихов В.Е., Заридзе Д.Г., Ковальчук М.В. Комбинирование двух технологических платформ для полногеномного секвенирования человека. Acta Naturae. 2009; 3:113-9.

Степухович А., Цуприк А., Кособокова О., Гаврилов Д., Горбовицкий Б., Гудков Г., Тышко Г., Черевишник М., Горфинкель В. Анализ капиллярно-электрофоретических систем секвенирования ДНК. Журн. технической физики. 2008; 78(6):90-102.

Чемерис А.В., Ахунов Э.Д., Вахитов В.А. Секвенирование ДНК. М.: Наука; 1999. 428 с.

xl DNA Analyzer. [Internet] Life Technologies [cited 27 Jan 2014]. Available from: https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=601642&tab=TechSpechttps://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=601642&tab=TechSpec

Series Genetic Analysis Systems. [Internet] Life Technologies 2014 [cited 27 Jan 2014]. Available from: http://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/solid-next-generation-sequencing/next-generation-systems.htmlhttp://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/solid-next-generation-sequencing/next-generation-systems.html

Bennett S.T., Barnes C., Cox A., Davies L., Brown C. Toward the 1,000 dollars human genome. Pharmacogenomics. 2005; 6(4):373-82.

Deamer D.W., Akeson M. Nanopores and nucleic acids: prospects for ultrarapid sequencing. Trends Biotechnol. 2000; 18(4): 147-51.

DNA sequencing (solid state nanopores). [Internet] Oxford Nanopore Technologies 2008-2014 [cited 27 Jan 2014]. Available from: http://www.nanoporetech.com/sections/index/81http://www.nanoporetech.com/sections/index/81

DNA Transistor. [Internet] IBM [cited 27 Jan 2014]. Available from: http://researcher.watson.ibm.com/researcher/view_project.php?id=1120http://researcher.watson.ibm.com/researcher/view_project.php?id=1120

GE Healthcare / Amersham Biosciences MegaBACE 4500 DNA Analysis System. [Internet] Artisan Technology Group [cited 27 Jan 2014]. Available from: http://www.artisantg.com/Scientific/70238-1/GE_Healthcare_Amersham_Biosciences_MegaBACE_4500_DNA_Analysis_Systemhttp://www.artisantg.com/Scientific/70238-1/GE_Healthcare_Amersham_Biosciences_MegaBACE_4500_DNA_Analysis_System

GenomeLab GeXP Genetic Analysis System. [Internet] Beckman Coulter, Inc. [2000-2014, cited 27 Jan 2014]. Available from: https://www.beckmancoulter.com/wsrportal/wsr/research-and-discovery/products-and-services/capillary-electrophoresis/genomelab-gexp-genetic-analysis-system/index.htm?i=A26572https://www.beckmancoulter.com/wsrportal/wsr/research-and-discovery/products-and-services/capillary-electrophoresis/genomelab-gexp-genetic-analysis-system/index.htm?i=A26572

GenomeLab GeXP Genetic Analysis System. [Internet] Beckman Coulter, Inc. [2000-2014, cited 27 Jan 2014]. Available from: https://www.beckmancoulter.com/wsrportal/wsr/research-and-discovery/products-and-services/capillary-electrophoresis/genomelab-gexp-genetic-analysis-system/index.htm?i=A26572https://www.beckmancoulter.com/wsrportal/wsr/research-and-discovery/products-andservices/capillary-electrophoresis/genomelab-gexp-genetic-analysis-system/index.htm?i=A26572

GS FLX+ System. [Internet] 454 sequencing. Roche Diagnostics Corporation 1996-2014 [cited 27 Jan 2014]. Available from: http://my454.com/products/gs-flx-system/index.asphttp://my454.com/products/gs-flx-system/index.asp

He H., Scheicher R.H., Pandey R., Rocha A.R., Sanvito S., Grigoriev A., Ahuja R., Karna S.P. Functionalized nanopore-embedded electrodes for rapid DNA sequencing. J. Phys. Chem. C. 2008; 112 (10):3456-9.

Hyman E.D. A new method of sequencing DNA. Anal Biochem. 1988; 174(2):423-36.

Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J. at al. Initial sequencing and analysis of the human genome. Nature. 2001; 409:860-921.

Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005; 437:376-80.

Montero C.I., Shea Y.R., Jones P.A., Harrington S.M., Tooke N.E, Witebsky F.G., Murray P.R. Evaluation of Pyrosequencing Technology for the Identification of Clinically Relevant Non-Dematiaceous Yeasts and Related Species. Eur. J. Clin. Microbiol. Infect. Dis. 2008; 27(9):821-30.

Nanopore Method Could Revolutionize Genome Sequencing. [Internet] Official web page of the University of California, San Diego [2006 Apr 6, cited 27 Jan 2014]. Available from: http://ucsdnews.ucsd.edu/newsrel/science/sfastdna.asphttp://ucsdnews.ucsd.edu/newsrel/science/sfastdna.asp

Nanopore Sequencing. [Internet] Harvard University [cited 27 Jan 2014]. Available from: http://www.mcb.harvard.edu/branton/http://www.mcb.harvard.edu/branton/

Overview of SOLiD™ Sequencing Chemistry. [Internet] Life Technologies 2013 [cited 27 Jan 2014]. Available from: http://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/solid-next-generation-sequencing/next-generation-systems/solid-sequencing-chemistry.htmlhttp://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/solid-next-generation-sequencing/next-generation-systems/solid-sequencing-chemistry.html

Peng H., Ling X.S. Reverse DNA translocation through a solid-state nanopore by magnetic tweezers. Nanotechnology. 2009; 20:185101.

Press releases. [Internet] Oxford Nanopore Technologies 2008-2014 [cited 27 Jan 2014]. Available from: https://www.nanoporetech.com/news/press-releaseshttps://www.nanoporetech.com/news/press-releases

PyroMark Q96 ID. [Internet] QIAGEN 2013 [cited 27 Jan 2014]. Available from: http://www.qiagen.com/products/catalog/automated-solutions/pyrosequencing/pyromark-q96-idhttp://www.qiagen.com/products/catalog/automated-solutions/pyrosequencing/pyromark-q96-id

Ronaghi M. Pyrosequencing Sheds Light on DNA Sequencing. Genome Res. 2001; 11:3-11.

Ronaghi M., Karamohamed S., Pettersson B., Uhlén M., Nyrén P. Real-Time DNA Sequencing Using Detection of Pyrophosphate Release. Anal. Biochem. 1996; 242(1):84-9.

Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors. Proc. Nati. Acad. Sci. USA. 1977; 74(12):5463-7.

Schneider G.F., Kowalczyk S.W., Calado V.E., Pandraud G., Zandbergen H.W., Vandersypen Lieven M.K., Dekker C. DNA Translocation through Graphene Nanopores. Nano Lett. 2010; 10(8):3163-7.

Semiconductor Sequencing Technology [Internet]. Life Technologies Corporation; 2014 [cited 27 Jan 2014]. Available from: http://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/Sequencing/Semiconductor-Sequencing/Semiconductor-Sequencing-Technology.htmlhttp://www.invitrogen.com/site/us/en/home/Products-and-Services/Applications/Sequencing/Semiconductor-Sequencing/Semiconductor-Sequencing-Technology.html

Sequencing single molecules of DNA. Nature. Published online 3 April 2008 [cited 27 Jan 2014]. doi: 10.1038/news.2008.735. Available from: http://www.nature.com/news/2008/080403/full/news.2008.735.html.
DOI: 10.1038/news.2008.735. Available from:http://www.nature.com/news/2008/080403/full/news.2008.735.html

Singer A., Wanunu M., Morrison W., Kuhn H., Frank-Kamenetskii M., Meller A. Nanopore Based Sequence Specific Detection of Duplex DNA for Genomic Profiling. Nano Lett. 2010; 10:738-42.

Smith L.M., Sanders J.Z., Kaiser R.J., Hughes P., Dodd C., Connell C.R., Heiner C., Kent S.B., Hood L.E. Fluorescence detection in automated DNA sequence analysis. Nature. 1986; 321(6071):674-9.

SMRT technology. [Internet] Pacific Biosciences of California, Inc. 2010 - 2014 [cited 27 Jan 2014]. Available from: http://www.pacificbiosciences.com/products/smrt-technologyhttp://www.pacificbiosciences.com/products/smrt-technology

Systems / Sequencing Systems. [Internet]. Illumina, Inc.; 2014 [cited 27 Jan 2014]. Available from: http://www.illumina.com/systems/sequencing.ilmnhttp://www.illumina.com/systems/sequencing.ilmn

The Technology. [Internet] 454 sequencing. Roche Diagnostics Corporation 1996-2014 [cited 27 Jan 2014]. Available from: http://454.com/products-solutions/how-it-works/index.asphttp://454.com/products-solutions/how-it-works/index.asp

Язык текста: Русский

ISSN: 0370-1069